Bookkeep | Shopify Franchise & Multi-Location Payouts
Multi-bank settlement for Shopify:
Split and transfer payouts by location, automatically
Bookkeep automates payout splitting across bank accounts by store, franchise, or fulfillment location—and transfers funds accordingly. Franchise fees? We collect those too.
See Payout splitting in Action
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Bookkeep can breakout your Shopify payout by POS location, as well as, automatically transfer funds to the appropriate bank account net of any fees, sales tax, chargebacks and other adjustments.
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Take a Tour of Payout splitting with shopify
Bookkeep handles the complexities of multi-location payout management—so you don’t have to.
Automated Payout Splitting by Location
Automatically split and transfer revenue and Shopify payouts by store, POS, franchise, or fulfillment location into multiple bank accounts.
Split by store or POS
Route funds automatically
Journal entries per location
Clean, Auditable Location-Level Accounting
Ensure accurate accounting records by posting detailed journal entries per store, franchisee, or business unit—automatically and without errors.
Accurate entries by entity
Audit-ready financials
No manual cleanup
Franchise Fee Collection at Payout
Withhold and route franchise fees automatically during payout distribution—before funds hit the bank.
Fees auto-withheld
Distribute net payouts
Simplify franchise ops
Gift Card & BOPIS Transfers
Easily manage complex workflows like gift card redemption and buy online/pick up in store with fulfillment-aware fund transfers.
Route gift card revenue
Support BOPIS payouts
Match bank to fulfillment
Shopify Payout Reconciliation, Automated
Every Shopify payout is tracked, matched, and reconciled down to the penny—no manual work or missing dollars.
Match deposits automatically
Track all fees and taxes
Reconcile to the penny
flow of funds
Bookkeep never touches the money, we just tell the system where to move it.
Built for the complexity of real Shopify businesses
Multi-location Shopify retailers
Split deposits and transfer funds by store bank, automatically
Franchise brands
Distribute payouts to franchisees and withhold fees at the point of settlement
In-store & ecommerce hybrids
Handle mixed revenue with fulfillment-aware fund distribution
Gift card redemption across stores
Transfer gift card revenue from issuing store to redemption store
Buy online, pick up in store (BOPIS)
Route revenue from online store to the fulfillment location’s bank
Accountants & finance teams
Ensure accurate, audit-ready records per location, without manual effort
Shopify payouts don’t tell the whole story.
Shopify payouts only show a single deposit summary even if you have multiple stores or franchises. With Bookkeep, you can see all of your deposits by location and settle them across multiple banks.
See How payout splitting Works
What Shopify merchants are saying
See how Bookkeep provides financial clarity for leading Shopify brands.
“With Bookkeep, we finally found a reliable and efficient solution to connect Shopify and QuickBooks. Managing the accounting for our franchise network is now streamlined and secure. Today, we have the peace of mind that every transaction is perfectly reconciled and that every cent is properly distributed to our franchisees. Bookkeep has become an essential partner for Shop Santé, and we highly recommend their services to any business looking for accurate and efficient accounting automation.”
Eric Fortier
Founder
“The closing process has gotten so much more simple because of Bookkeep. We now have real-time numbers that I’m confident are right, giving us the ability to do a lot more higher-level analysis, which is better decision-making for the business.”
Brian Thalman
Financial Controller
“I now can take a breath and focus on streamlining procedures, think about the culture I want my company to have, and focus on clients that are better matched for my process… I am now more focused on HR, marketing, and growth. I spend more time on my own company’s financials, which I NEVER did… I also meet with peers, partners, and potential clients in meetings throughout the day, in addition to webinars that I like to participate in.”
Rachel Dauchy
Owner
“One of the things I really love about Bookkeep is its compliance area. I can find everything quickly and can see exactly how the entries are calculated and booked, since it’s linked to platforms like Square or Shopify. I have no worries if there is ever an audit… No one else does this. Bookkeep works so well, I forget I’m using it!”
Sherri-Lee Mathers
CPB, AIA
Eric Fortier
Founder
Brian Thalman
Financial Controller
Rachel Dauchy
Owner
Sherri-Lee Mathers
CPB, AIA
Eric Fortier
Founder
Brian Thalman
Financial Controller
Rachel Dauchy
Owner
Sherri-Lee Mathers
CPB, AIA
Eric Fortier
Founder
Brian Thalman
Financial Controller
Rachel Dauchy
Owner
Sherri-Lee Mathers
CPB, AIA
Eric Fortier
Founder
Brian Thalman
Financial Controller
Rachel Dauchy
Owner
Sherri-Lee Mathers
CPB, AIA
Eric Fortier
Founder
Brian Thalman
Financial Controller
Rachel Dauchy
Owner
Sherri-Lee Mathers
CPB, AIA
Eric Fortier
Founder
Brian Thalman
Financial Controller
Rachel Dauchy
Owner
Sherri-Lee Mathers
CPB, AIA
Eric Fortier
Founder
Brian Thalman
Financial Controller
Rachel Dauchy
Owner
Sherri-Lee Mathers
CPB, AIA
Eric Fortier
Founder
Brian Thalman
Financial Controller
Rachel Dauchy
Owner
Sherri-Lee Mathers
CPB, AIA
Eric Fortier
Founder
Brian Thalman
Financial Controller
Rachel Dauchy
Owner
Sherri-Lee Mathers
CPB, AIA
“I would just simply recommend Bookkeep because of the confidence that it gives when your transactions are posted and it tells me to expect a payment and then the payment comes in that, that boosts my confidence. I’ve never been able to reconcile the clearing accounts and I would like to be able to do that and we’re closer now than we’ve ever been.”
Forrest Allen
Head of Accounting
“All of my e-commerce clients are now on Bookkeep. Bookkeep allows me to provide transparent reports that match the sales platforms on a daily basis. It allows me the opportunity to move forward at a better speed, growing my business efficiently.”
Maureen Stevens
Founder
“Bookkeep has saved me hours of time dealing with our clients accepting payments from Square, Shopify, Amazon, etc. This application allows us to even grab historical data as we are wrapping up client books for tax prep. The support is superior. This is a must have tool for every accounting professional.”
Dawn Brolin
CPA, CFE, Owner
%201.avif)
“My time is worth something. The free time Bookkeep is giving me is more than worth it. By saving a lot of hours each month with Bookkeep, I can work on important things. It’s an investment, not an expense.”
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner