Automated Accounting for Multi-Channel Shopify Brands
Automated accounting for Shopify brands selling on multiple channels
Bookkeep syncs Shopify with Amazon, Walmart, Meta, PayPal, and more — posting clean, consolidated entries to your accounting system with accurate revenue recognition, deposit reconciliation, and sales tax compliance.
Trusted by top ecommerce and retail Shopify brands
One accounting system for all your sales channels
Automated multi-channel journal entries
Accrual-based, daily summaries posted to your accounting system from each connected platform.
One entry per payout per channel
Works with QuickBooks, Xero, NetSuite, Sage Intacct
Reduces errors and closes books faster
Consolidated revenue reporting
See total revenue across Shopify, Amazon, PayPal, Walmart, and more — no spreadsheets required.
Roll up data by channel or payment method
Break down sales by item, category, or location
Spot revenue gaps or missing deposits instantly
Accurate accounting for every channel
Different platforms, same standards — Bookkeep enforces GAAP-aligned revenue recognition across all sales sources.
Recognize revenue when fulfilled, not paid
Support for deferred revenue and gift cards
Automatically maps transactions to correct accounts
Payout reconciliation
Track and reconcile every payout from every channel to your bank — down to the penny.
Automates sales, refunds, fees, and taxes
Matches deposits across multiple channels
Flags payout discrepancies automatically
Integrated sales tax support
Sync your tax settings from each channel and let Bookkeep handle the rest.
Files and remits taxes by jurisdiction
Supports multiple tax engines and rate structures
No manual downloads or portal logins required
How multi-channel automation works
Shopify Bookkeep Demo
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PRODUCT TOUR
Experience Bookkeep for Shopify
Choose your tour or close this window and click around.
1
Standard Features Tour
The most used features for Shopify merchants.
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2
Fulfillment Revenue Recognition
Larger businesses might require booking revenue by fulfillment date.
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3
How to get started.
Learn how to connect Shopify and your accounting platform to Bookkeep.
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4
Split Payouts for POS
Need to automatically transfer funds for each POS location?
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See how Bookkeep automates entries across all your connected platforms — not just Shopify.
Support your merchants with smarter financial workflows
If you’re a Shopify agency or implementation partner, Bookkeep helps your merchants automate their sales data, deposits, and tax — and saves you time during onboarding and ongoing support.
Work at Shopify? Help your merchants automate their accounting
If you're on Shopify's sales, success, or partnerships team, Bookkeep is the financial automation platform your merchants have been asking for. We automate journal entries, sales tax, and payout reconciliation — so your merchants stay happy and scale faster.
Multi-bank settlement for Shopify
Split and transfer payouts by location, automatically
Bookkeep automates payout splitting across bank accounts by store, franchise, or fulfillment location—and transfers funds accordingly. Franchise fees? We collect those too.
Sales tax across all channels, filed for you
Selling on multiple platforms shouldn’t mean managing multiple tax portals. Bookkeep calculates, files, and remits sales tax based on each platform’s settings — all from one unified dashboard.
What Shopify merchants are saying
See how Bookkeep provides financial clarity for leading Shopify brands.
“With Bookkeep, we finally found a reliable and efficient solution to connect Shopify and QuickBooks. Managing the accounting for our franchise network is now streamlined and secure. Today, we have the peace of mind that every transaction is perfectly reconciled and that every cent is properly distributed to our franchisees. Bookkeep has become an essential partner for Shop Santé, and we highly recommend their services to any business looking for accurate and efficient accounting automation.”
Eric Fortier
Founder
“The closing process has gotten so much more simple because of Bookkeep. We now have real-time numbers that I’m confident are right, giving us the ability to do a lot more higher-level analysis, which is better decision-making for the business.”
Brian Thalman
Financial Controller
“I now can take a breath and focus on streamlining procedures, think about the culture I want my company to have, and focus on clients that are better matched for my process… I am now more focused on HR, marketing, and growth. I spend more time on my own company’s financials, which I NEVER did… I also meet with peers, partners, and potential clients in meetings throughout the day, in addition to webinars that I like to participate in.”
Rachel Dauchy
Owner
“One of the things I really love about Bookkeep is its compliance area. I can find everything quickly and can see exactly how the entries are calculated and booked, since it’s linked to platforms like Square or Shopify. I have no worries if there is ever an audit… No one else does this. Bookkeep works so well, I forget I’m using it!”
Sherri-Lee Mathers
CPB, AIA
Eric Fortier
Founder
Brian Thalman
Financial Controller
Rachel Dauchy
Owner
Sherri-Lee Mathers
CPB, AIA
Eric Fortier
Founder
Brian Thalman
Financial Controller
Rachel Dauchy
Owner
Sherri-Lee Mathers
CPB, AIA
Eric Fortier
Founder
Brian Thalman
Financial Controller
Rachel Dauchy
Owner
Sherri-Lee Mathers
CPB, AIA
Eric Fortier
Founder
Brian Thalman
Financial Controller
Rachel Dauchy
Owner
Sherri-Lee Mathers
CPB, AIA
Eric Fortier
Founder
Brian Thalman
Financial Controller
Rachel Dauchy
Owner
Sherri-Lee Mathers
CPB, AIA
Eric Fortier
Founder
Brian Thalman
Financial Controller
Rachel Dauchy
Owner
Sherri-Lee Mathers
CPB, AIA
Eric Fortier
Founder
Brian Thalman
Financial Controller
Rachel Dauchy
Owner
Sherri-Lee Mathers
CPB, AIA
Eric Fortier
Founder
Brian Thalman
Financial Controller
Rachel Dauchy
Owner
Sherri-Lee Mathers
CPB, AIA
Eric Fortier
Founder
Brian Thalman
Financial Controller
Rachel Dauchy
Owner
Sherri-Lee Mathers
CPB, AIA
“I would just simply recommend Bookkeep because of the confidence that it gives when your transactions are posted and it tells me to expect a payment and then the payment comes in that, that boosts my confidence. I’ve never been able to reconcile the clearing accounts and I would like to be able to do that and we’re closer now than we’ve ever been.”
Forrest Allen
Head of Accounting
“All of my e-commerce clients are now on Bookkeep. Bookkeep allows me to provide transparent reports that match the sales platforms on a daily basis. It allows me the opportunity to move forward at a better speed, growing my business efficiently.”
Maureen Stevens
Founder
“Bookkeep has saved me hours of time dealing with our clients accepting payments from Square, Shopify, Amazon, etc. This application allows us to even grab historical data as we are wrapping up client books for tax prep. The support is superior. This is a must have tool for every accounting professional.”
Dawn Brolin
CPA, CFE, Owner
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“My time is worth something. The free time Bookkeep is giving me is more than worth it. By saving a lot of hours each month with Bookkeep, I can work on important things. It’s an investment, not an expense.”
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner
Forrest Allen
Head of Accounting
Maureen Stevens
Founder
Dawn Brolin
CPA, CFE, Owner
%201.avif)
Chip Adkins
Chef/Owner