Automated Shopify Accounting Solutions for Accountants

Partner with Bookkeep to automate accounting for your Shopify clients

Bookkeep empowers accounting and finance firms to deliver clean books, accurate sales tax compliance, and scalable Shopify accounting solutions—boosting your capacity and client satisfaction.

Partner with Us Book a Demo

Built for accounting and finance firms serving Shopify merchants

Accounting & Bookkeeping Firms

Practices focused on ecommerce merchants that need reliable, automated Shopify accounting and sales tax compliance tools.

Controllers & CFOs

Finance leaders seeking streamlined revenue recognition, payout reconciliation, and multi-entity reporting across Shopify channels.

Tax Specialists

Experts managing multi-state sales tax compliance and filings for Shopify merchants, with automated data and audit-ready records.

Finance Operations Teams

Internal teams that need to eliminate manual reconciliations and maintain clean, scalable financial processes for Shopify clients.

Help your Shopify clients succeed — grow your firm with less manual work

Accurate, automated journal entries

Summary-level entries by day, location, sales channel, or payout — fully compatible with QuickBooks Online, Xero, NetSuite, and Sage Intacct.

Built-in sales tax compliance

From tracking to filing and remittance — automated and integrated for Shopify merchants across all jurisdictions.

Deposit splitting & payout reconciliation

Eliminate manual reconciliation headaches by automating multi-location payout splits and deposit matching.

COGS, BOPIS, gift cards, and more

Accounting automation that reflects Shopify merchant realities—including complex order fulfillment and deferred revenue.

Dedicated ecommerce accounting support

Work with a team of accounting experts focused on Shopify to ensure your firm’s success.

Empowering accounting firms with tools and support to grow

Better accounting data for happier clients

Deliver clean, accurate financials that reduce errors and speed up month-end closes.

Streamlined workflows to increase capacity

Automate manual bookkeeping tasks so your team can onboard and manage more Shopify clients efficiently.

Discounted pricing for growing firms

Save more as your client base on Bookkeep grows — special rates available for firms with 10+ clients.

Dedicated team of accounting experts

Get personalized support from Bookkeep’s ecommerce accounting specialists to help your firm and clients succeed.

What Shopify merchants are saying

See how Bookkeep provides financial clarity for leading Shopify brands.

Read Case Studies

“With Bookkeep, we finally found a reliable and efficient solution to connect Shopify and QuickBooks. Managing the accounting for our franchise network is now streamlined and secure. Today, we have the peace of mind that every transaction is perfectly reconciled and that every cent is properly distributed to our franchisees. Bookkeep has become an essential partner for Shop Santé, and we highly recommend their services to any business looking for accurate and efficient accounting automation.”

Eric Fortier

Founder

“The closing process has gotten so much more simple because of Bookkeep. We now have real-time numbers that I’m confident are right, giving us the ability to do a lot more higher-level analysis, which is better decision-making for the business.”

Brian Thalman

Financial Controller

“I now can take a breath and focus on streamlining procedures, think about the culture I want my company to have, and focus on clients that are better matched for my process… I am now more focused on HR, marketing, and growth. I spend more time on my own company’s financials, which I NEVER did… I also meet with peers, partners, and potential clients in meetings throughout the day, in addition to webinars that I like to participate in.”

Rachel Dauchy

Owner

“One of the things I really love about Bookkeep is its compliance area. I can find everything quickly and can see exactly how the entries are calculated and booked, since it’s linked to platforms like Square or Shopify. I have no worries if there is ever an audit… No one else does this. Bookkeep works so well, I forget I’m using it!”

Sherri-Lee Mathers

CPB, AIA

Eric Fortier

Founder

Brian Thalman

Financial Controller

Rachel Dauchy

Owner

Sherri-Lee Mathers

CPB, AIA

Eric Fortier

Founder

Brian Thalman

Financial Controller

Rachel Dauchy

Owner

Sherri-Lee Mathers

CPB, AIA

Eric Fortier

Founder

Brian Thalman

Financial Controller

Rachel Dauchy

Owner

Sherri-Lee Mathers

CPB, AIA

Eric Fortier

Founder

Brian Thalman

Financial Controller

Rachel Dauchy

Owner

Sherri-Lee Mathers

CPB, AIA

Eric Fortier

Founder

Brian Thalman

Financial Controller

Rachel Dauchy

Owner

Sherri-Lee Mathers

CPB, AIA

Eric Fortier

Founder

Brian Thalman

Financial Controller

Rachel Dauchy

Owner

Sherri-Lee Mathers

CPB, AIA

Eric Fortier

Founder

Brian Thalman

Financial Controller

Rachel Dauchy

Owner

Sherri-Lee Mathers

CPB, AIA

Eric Fortier

Founder

Brian Thalman

Financial Controller

Rachel Dauchy

Owner

Sherri-Lee Mathers

CPB, AIA

Eric Fortier

Founder

Brian Thalman

Financial Controller

Rachel Dauchy

Owner

Sherri-Lee Mathers

CPB, AIA

“I would just simply recommend Bookkeep because of the confidence that it gives when your transactions are posted and it tells me to expect a payment and then the payment comes in that, that boosts my confidence. I’ve never been able to reconcile the clearing accounts and I would like to be able to do that and we’re closer now than we’ve ever been.”

Forrest Allen

Head of Accounting

“All of my e-commerce clients are now on Bookkeep. Bookkeep allows me to provide transparent reports that match the sales platforms on a daily basis. It allows me the opportunity to move forward at a better speed, growing my business efficiently.”

Maureen Stevens

Founder

“Bookkeep has saved me hours of time dealing with our clients accepting payments from Square, Shopify, Amazon, etc. This application allows us to even grab historical data as we are wrapping up client books for tax prep. The support is superior. This is a must have tool for every accounting professional.”

Dawn Brolin

CPA, CFE, Owner

%201.avif)

“My time is worth something. The free time Bookkeep is giving me is more than worth it. By saving a lot of hours each month with Bookkeep, I can work on important things. It’s an investment, not an expense.”

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner

Forrest Allen

Head of Accounting

Maureen Stevens

Founder

Dawn Brolin

CPA, CFE, Owner

%201.avif)

Chip Adkins

Chef/Owner